NanoComp report

Summary statistics

feature
General summary H9_2_1 H9_3_1 H9_4_1 HEYA8_1_1 HEYA8_2_1 HEYA8_3_1
Mean read length 1,209.5 1,182.0 1,212.6 1,219.6 1,203.9 1,189.8
Mean read quality 9.9 9.5 9.8 9.9 9.7 9.5
Median read length 904.0 886.0 907.0 894.0 883.0 869.0
Median read quality 11.4 11.1 11.2 11.4 11.2 10.9
Number of reads 660,799.0 656,225.0 929,959.0 1,097,491.0 1,007,926.0 1,362,327.0
Read length N50 1,633.0 1,599.0 1,638.0 1,689.0 1,669.0 1,644.0
STDEV read length 948.1 926.1 952.4 968.0 956.4 948.6
Total bases 799,215,740.0 775,656,260.0 1,127,665,186.0 1,338,457,247.0 1,213,460,776.0 1,620,959,532.0
Number, percentage and megabases of reads above quality cutoffs
>Q10 503353 (76.2%) 670.9Mb 461972 (70.4%) 614.6Mb 686872 (73.9%) 924.7Mb 838262 (76.4%) 1126.6Mb 734585 (72.9%) 986.8Mb 949435 (69.7%) 1270.7Mb
>Q15 1089 (0.2%) 0.8Mb 566 (0.1%) 0.4Mb 1499 (0.2%) 1.1Mb 2336 (0.2%) 1.8Mb 1202 (0.1%) 0.9Mb 818 (0.1%) 0.5Mb
>Q20 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 1 (0.0%) 0.0Mb 1 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb
>Q25 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb
>Q30 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 18.5 (106) 18.0 (406) 20.0 (55) 20.2 (86) 20.7 (169) 18.7 (61)
2 17.7 (18) 17.5 (94) 19.4 (135) 18.8 (248) 19.4 (145) 18.5 (277)
3 17.7 (111) 17.3 (70) 18.4 (104) 18.6 (88) 19.3 (170) 17.9 (92)
4 17.7 (226) 17.1 (819) 18.4 (56) 18.4 (131) 19.2 (155) 17.6 (108)
5 17.4 (873) 17.0 (614) 18.2 (399) 17.9 (75) 18.2 (155) 17.6 (281)
Top 5 longest reads and their mean basecall quality score
1 21877 (4.7) 14032 (12.1) 31762 (5.0) 47919 (4.7) 40562 (5.5) 63248 (3.3)
2 19959 (10.8) 12730 (12.1) 20884 (6.8) 17764 (2.4) 24986 (4.5) 35252 (3.3)
3 19653 (2.9) 12582 (12.2) 20244 (12.0) 15918 (12.4) 24461 (2.4) 19965 (4.6)
4 15780 (4.5) 12274 (10.3) 19025 (4.5) 15590 (11.9) 16451 (2.3) 17958 (5.1)
5 15513 (6.2) 12184 (12.5) 18737 (4.7) 15170 (10.2) 15646 (12.9) 17878 (6.1)

Plots

Comparing number of reads

Comparing throughput in bases

Comparing read length N50

Comparing read length

Comparing log-transformed read length

Comparing average base call quality score

Histogram of read lengths

Normalized histogram of read lengths

Weighted histogram of read lengths

Histogram of log transformed read lengths

Normalized histogram of log transformed read lengths

Weighted histogram of log transformed read lengths